Frequently Asked Questions FAQs

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Will the SysQuant® Global Phosphoproteomic workflow enable me to detect & quantify my pathway/protein(s)/phosphorylation site(s) of interest?
SysQuant® Global Phosphoproteomics

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Why do you advise this type of enrichment for the analysis of phosphorylation over an antibody based approach?
SysQuant® Global Phosphoproteomics

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What types of sample can be analysed using the SysQuant® Global Phosphoproteomic workflow?
SysQuant® Global Phosphoproteomics

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What is the recommended amount of starting material per sample for a SysQuant® study?
SysQuant® Global Phosphoproteomics

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What type of mass spectrometry is used for a SysQuant® study?
SysQuant® Global Phosphoproteomics

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Do we need to pre-treat our cells like a SILAC experiment?
SysQuant® Global Phosphoproteomics

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How many proteins are identified in a SysQuant® study?
SysQuant® Global Phosphoproteomics

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What coverage of the phosphoproteome is identified by the SysQuant® workflow?
SysQuant® Global Phosphoproteomics

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What is the sensitivity of the SysQuant® workflow?
SysQuant® Global Phosphoproteomics

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What percentage fold changes can be discerned between peptides and phosphopeptides in a SysQuant® study?
SysQuant® Global Phosphoproteomics

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What is the analytical performance of the SysQuant® workflow?
SysQuant® Global Phosphoproteomics

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What does the SysQuant®l data output look like?
SysQuant® Global Phosphoproteomics

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What additional bioinformatics and data interpretation packages are available for a SysQuant study?
SysQuant® Global Phosphoproteomics

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Why do you recommend TMTcalibrator™ over TMT®-MS3 or SRM/MRM for fluid biomarker discovery?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What types of sample can be analyzed using the TMTcalibrator™ workflow?
TMTcalibrator™ tissue-enhanced fluid proteomics

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Can synthetic or recombinant peptides be used as the calibrant in a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What is the recommended amount of starting material per sample for a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What type of mass spectrometry is used for a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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Can enrichment or immunoprecipitation be incorporated into a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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Is it possible to incorporate an include list into the mass spectrometry method for TMTcalibrator™?
TMTcalibrator™ tissue-enhanced fluid proteomics

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How many proteins are identified in a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What is the sensitivity of the TMTcalibrator™ workflow?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What does the TMTcalibrator™ data output look like?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What additional bioinformatics and data interpretation packages are available for a TMTcalibrator™ study?
TMTcalibrator™ tissue-enhanced fluid proteomics

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What types of sample can be analyzed using the TMT®MS3 workflow?
TMT®MS3 quantitative proteomics

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How many samples can be analyzed in a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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What is the recommended amount of starting material per sample for a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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Can enrichment or immunoprecipitation be incorporated into a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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What type of mass spectrometry is used for a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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Is it possible to incorporate an include list into the mass spectrometry method for a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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What does the TMT®MS3 data output look like?
TMT®MS3 quantitative proteomics

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What additional bioinformatics and data interpretation packages are available for a TMT®MS3 study?
TMT®MS3 quantitative proteomics

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What is SRM?
SRM Assay Development

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Why should I choose a SRM assay over a TMT®SRM assay for candidate biomarker validation?
SRM Assay Development

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Why should I choose a SRM assay over an antibody based method for candidate biomarker validation?
SRM Assay Development

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How many proteins can be included in a SRM Assay?
SRM Assay Development

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What are the stages of SRM Assay Development?
SRM Assay Development

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What types of sample can be analyzed using a SRM assay?
SRM Assay Development

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What performance characteristics are defined during TMT ® SRM assay development?
SRM Assay Development

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What type of mass spectrometry is used for a SRM study?
SRM Assay Development

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What does the SRM data output look like?
SRM Assay Development

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What additional bioinformatics and data interpretation packages are available for a SRM study?
SRM Assay Development

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What is TMT®SRM?
TMT®SRM Assay Development

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Why should I choose a TMT®SRM assay over a SRM assay for candidate biomarker validation?
TMT®SRM Assay Development

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Why should I choose a TMT®SRM assay over an antibody based method for candidate biomarker validation?
TMT®SRM Assay Development

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How many proteins can be included in a TMT®SRM Assay?
TMT®SRM Assay Development

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What are the stages of TMT ® SRM Assay Development?
TMT®SRM Assay Development

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What types of sample can be analysed using a TMT ® SRM assay?
TMT®SRM Assay Development

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What performance characteristics are defined during TMT®SRM assay development?
TMT®SRM Assay Development

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What type of mass spectrometry is used for a TMT®SRM study?
TMT®SRM Assay Development

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What does the TMT®SRM data output look like?
TMT®SRM Assay Development

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What additional bioinformatics and data interpretation packages are available for a TMT®SRM study?
TMT®SRM Assay Development

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What is TMT®MS2?
TMT®MS2 Broadest Coverage Workflow

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What types of sample can be analyzed using the TMT®MS2 workflow?
TMT®MS2 Broadest Coverage Workflow

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Why should I choose a TMT®MS2 study over a TMT®MS3 study?
TMT®MS2 Broadest Coverage Workflow

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How many samples can be analyzed in a TMT®MS2 study?
TMT®MS2 Broadest Coverage Workflow

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What is the recommended amount of starting material per sample for a TMT®MS2 study?
TMT®MS2 Broadest Coverage Workflow

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Can enrichment or immunoprecipitation be incorporated into a TMT®MS2 study?

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What type of mass spectrometry is used for a TMT®MS2 study?

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Is it possible to incorporate an include list into the mass spectrometry method for a TMT®MS2 study?
TMT®MS2 Broadest Coverage Workflow

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What does the TMT®MS2 data output look like?
TMT®MS2 Broadest Coverage Workflow

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What additional bioinformatics and data interpretation packages are available for a TMT®MS2 study?
TMT®MS2 Broadest Coverage Workflow

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What is TMT®MS3?
TMT®MS3 quantitative proteomics

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